BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012G01LP1|AL426407
(780 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1093 1508 0.0
>3x_Contig1093
Length = 5169
Score = 1508 bits (755), Expect = 0.0
Identities = 769/780 (98%)
Strand = Plus / Minus
Query: 1 agatcacgctaatgcgctgctgttacwgtaagtactaagtattctaggaccaacacaact 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2512 agatcacgctaatgcgctgctgttacagtaagtactaagtattctaggaccaacacaact 2453
Query: 61 actgcagtttgatatgatttctgtcgactccagtcggtagtatagacaaatagacaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 actgcagtttgatatgatttctgtcgactccagtcggtagtatagacaaatagacaatta 2393
Query: 121 aaggttttagtcaagattctttcagtattatatactatccatatatatgatttatatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 aaggttttagtcaagattctttcagtattatatactatccatatatatgatttatatcca 2333
Query: 181 ctgacaactaagatcagctaaaaaagatcaaaatatacaaaacaaatcttttttcatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 ctgacaactaagatcagctaaaaaagatcaaaatatacaaaacaaatcttttttcatgtt 2273
Query: 241 tcactgttgtaaatcttgcgaatgcgagtcgatcagttcttgttgataagatagtagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tcactgttgtaaatcttgcgaatgcgagtcgatcagttcttgttgataagatagtagatc 2213
Query: 301 cgaaacaaacctttccaacacgacatccctgacgacgtttttattagatccaaaggaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 cgaaacaaacctttccaacacgacatccctgacgacgtttttattagatccaaaggaatt 2153
Query: 361 tragttaacttcgaaatcgctttcgtcatgcataaactctgggacggtaatggtccctct 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 taagttaacttcgaaatcgctttcgtcatgcataaactctgggacggtaatggtccctct 2093
Query: 421 gcaaacttcttccccctccttcgtgagcvctgcatcaaactccaaatgcragtcaaagta 480
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 2092 gcaaacttcttccccctccttcgtgagcactgcatcaaactccaaatgcaagtcaaagta 2033
Query: 481 gcagatcaccttacccttcctttgtgaaacgttagagtctccgctacaggactttagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 gcagatcaccttacccttcctttgtgaaacgttagagtctccgctacaggactttagttt 1973
Query: 541 ttccacggtgactaagtactcatcgttggaatgttgccagtkagtgaaacgncgattcar 600
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 1972 ttccacggtgactaagtactcatcgttggaatgttgccagttagtgaaacgacgattcaa 1913
Query: 601 ataatcgttggtccatcccagtgtatttttatcgacccagtgccagttgttagggtttaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 ataatcgttggtccatcccagtgtatttttatcgacccagtgccagttgttagggtttaa 1853
Query: 661 wactaccatggttctgataagacgaaaccttatttwagcaattcgatttccttgagaagc 720
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1852 aactaccatggttctgataagacgaaaccttatttaagcaattcgatttccttgagaagc 1793
Query: 721 aaagaaagcgcaasaaaccaatccacacactgagaattagacacacacttggtctgaata 780
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 aaagaaagcgcaagcaaccaatccacacactgagaattagacacacacttggtctgaata 1733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4828
Number of Sequences: 1807
Number of extensions: 4828
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 780
length of database: 10,358,551
effective HSP length: 16
effective length of query: 764
effective length of database: 10,329,639
effective search space: 7891844196
effective search space used: 7891844196
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)